Browse of TCMCG002C05006 protein

CDS

Accession Number	TCMCG002C05006
gbkey	CDS
Protein Id	XP_020084456.1
Location	complement(join(9860864..9860978,9861799..9862187,9864646..9864831,9864943..9865116,9865242..9865373,9865496..9865723,9866213..9866290,9866381..9866446,9866551..9866631,9869334..9870094,9870420..9870613,9871026..9871120,9872176..9872316,9872755..9872832,9873289..9873417,9874954..9875088,9875979..9876095,9876219..9876270,9876422..9876553,9877147..9877199,9877331..9877426,9877750..9877895,9879075..9879210,9880013..9880166,9882223..9882369,9882851..9883233))
Gene	LOC109707540
GeneID	109707540
Organism	Ananas comosus

Protein

Length	1465aa
Molecule type	protein
Topology	linear
Data_file_division	PLN
dblink	BioProject:PRJNA371634
db_source	XM_020228867.1
Definition	probable cleavage and polyadenylation specificity factor subunit 1 isoform X1 [Ananas comosus]

EGGNOG-MAPPER Annotation

COG_category	A
Description	Cleavage and polyadenylation specificity factor subunit 1
KEGG_TC	-
KEGG_Module	-
KEGG_Reaction	-
KEGG_rclass	-
BRITE	ko00000        [VIEW IN KEGG] ko00001        [VIEW IN KEGG] ko03019        [VIEW IN KEGG] ko03021        [VIEW IN KEGG]
KEGG_ko	ko:K14401        [VIEW IN KEGG]
EC	-
KEGG_Pathway	ko03015        [VIEW IN KEGG] map03015        [VIEW IN KEGG]
GOs	GO:0003674        [VIEW IN EMBL-EBI] GO:0003676        [VIEW IN EMBL-EBI] GO:0003723        [VIEW IN EMBL-EBI] GO:0003729        [VIEW IN EMBL-EBI] GO:0005488        [VIEW IN EMBL-EBI] GO:0005575        [VIEW IN EMBL-EBI] GO:0005622        [VIEW IN EMBL-EBI] GO:0005623        [VIEW IN EMBL-EBI] GO:0005634        [VIEW IN EMBL-EBI] GO:0005737        [VIEW IN EMBL-EBI] GO:0005829        [VIEW IN EMBL-EBI] GO:0006139        [VIEW IN EMBL-EBI] GO:0006378        [VIEW IN EMBL-EBI] GO:0006379        [VIEW IN EMBL-EBI] GO:0006396        [VIEW IN EMBL-EBI] GO:0006397        [VIEW IN EMBL-EBI] GO:0006725        [VIEW IN EMBL-EBI] GO:0006807        [VIEW IN EMBL-EBI] GO:0008150        [VIEW IN EMBL-EBI] GO:0008152        [VIEW IN EMBL-EBI] GO:0009987        [VIEW IN EMBL-EBI] GO:0010467        [VIEW IN EMBL-EBI] GO:0016070        [VIEW IN EMBL-EBI] GO:0016071        [VIEW IN EMBL-EBI] GO:0031123        [VIEW IN EMBL-EBI] GO:0031124        [VIEW IN EMBL-EBI] GO:0034641        [VIEW IN EMBL-EBI] GO:0043170        [VIEW IN EMBL-EBI] GO:0043226        [VIEW IN EMBL-EBI] GO:0043227        [VIEW IN EMBL-EBI] GO:0043229        [VIEW IN EMBL-EBI] GO:0043231        [VIEW IN EMBL-EBI] GO:0043631        [VIEW IN EMBL-EBI] GO:0044237        [VIEW IN EMBL-EBI] GO:0044238        [VIEW IN EMBL-EBI] GO:0044424        [VIEW IN EMBL-EBI] GO:0044444        [VIEW IN EMBL-EBI] GO:0044464        [VIEW IN EMBL-EBI] GO:0046483        [VIEW IN EMBL-EBI] GO:0071704        [VIEW IN EMBL-EBI] GO:0090304        [VIEW IN EMBL-EBI] GO:0090305        [VIEW IN EMBL-EBI] GO:0090501        [VIEW IN EMBL-EBI] GO:0097159        [VIEW IN EMBL-EBI] GO:1901360        [VIEW IN EMBL-EBI] GO:1901363        [VIEW IN EMBL-EBI]

Sequence

CDS:   ATGAGCTACGCGGCCTTCAAAATGATGCATTGGCCCACGGGGATCGAGAACTGCGCCGCCGGGTTCTTCACCCACTCCCCATCCTCCTCCTCCTCCTCCTCCGCCGCCGCCGCGGAGGCGACGGCGGCCGCCGAGATCCCTCCCCTGCCCGGCGACGAACTCGAGGCGGCGGAGTGGCAGCAGGGGAGGAGGCGACGCGGGGTTGGCGCCGTTCCCGACCTCGTCGTCACGGCGGGGAACGTGCTCGAGATCTACGTAGTTAGGGCGCAGGAGGACGAGGGGAGAGCCCCTCGGGCCTCCGGCGAGCAGAAGCGCGGCGGCGGAGGCGGCGGCGTTGTCGACGGGATCTCTGGTGCCCGCCTCGAGCTCGTGTGCCACTATCGCTTGCATGGCAATGTGGAATCAATGGCAGTTTTATCTGTTGGAGCTGATAATCGCAGCAACAGAAGAGATTCTATTGTCCTAGCATTCCAAGATGCAAAAATCACCGTGTTAGAATATGATGATTCACTACATGGACTGCGGACAAGTTCCATGCACTGTTTTGAAGGGCCAGACTGGCAGTACCTGAAAAGAGGCAGGGAGTCGTTTGCCCGTGGTCCTATTGTAAAGGCCGATCCCTCAGGCCGATGTGGTGGAGCACTTGTTTATGGGCTTCAAATGATTATTCTTAAAGCTGCTCAGGCTGGGCAGAGTTTAGTTGGAGATGATGAGCCTAACAGTGCTGGAGGCACTATCTCTGTTCGTATTGAGTCATCTTATGTGATTAATTTGCGTGAATTAGACATGAATCATGTCAAAGATTTCACATTCGTACATGGTTATATTGAGCCTGTTATGGTTATACTTCATGAAAGAGAGCCTACATGGGCTGGCCGTATCTCATGGAAGCACCACACATGCATGATTTCTGCGCTTAGCGTCAGCACAACTTTGAAACAACATCCGATGATATGGTCTGCATCTAATCTTCCACATGATGCATACAAACTTCTTGCGGTGCCTTCACCAATTGGCGGTGTTCTTGTGATCTGTGCAAACTCCATACACTATCACAGTCAGTCCGCATCTTGCTCTCTGAGTCTCAACAGTTTCTCATCGCAGCCGGATGGCAGTCTTGAAATGCCTAAATCGAACTTCGCTGTGGAGCTTGATGCAGCTCATGCAACATGGTTATCACATGATGTTGCTATGTTCTCATCAAAGACTGGAGAATTACTATTGCTCACCTTGGTCTATGATGGAAGAATTGTGCAGAGACTTGATCTTGTGAAATCCAAAGCTTCAGTTTTGACCTCGGGTTTGACAACTATTGGGAGTTCATTCTTCTTCCTTGGCAGTCGCCTGGGAGACAGCCTCCTTGTGCAATATAGCTGCGGGACGTCAGTGCCAACTTCTAGCCAAGTGAAAGATGAGGCTACTGATATTGATGGTGATGTCCCTTCAGCAAAGCGATTAAGAAGGATGTCTTCAGATGCTTTACAAGATGTTACCAGTGTTGAGGAGCTGTCTTTGTATAATAATGCTCCGAACAGTTCAGAGTCAGCACAGAAGTCCTTCTCATTCGCGGTTAGAGATTCGTTAATTAATGTTGGCCCGTTGAAGGATTTTTCTTATGGTTTAAGGATCAATGCAGATCCCAATTCCACAGGACTTGCTAAGCAGAGCAACTATGAGTTGGTATGCTGTTCCGGTCATGGAAAAAATGGAGCCCTTTGTGTTCTCCAACAATCAATTCGCCCTGAGCTGATTACCGAGGTGGTGTTAGCTGGCTGCAAGGGGATATGGACTGTATACCATAAAAGCTCACGCGGTCATGCAACTGATTCTTCTAAAACAATGACAGAGAATGATGAATATCATGCATATCTTATAATAAGCCTGGAGAGTCGTACAATGGTTCTTGAGACAGCTGATGATTTGGGAGAGGTTACTGAAACTGTTGATTATTATGTACATGGAAGTACAATTGCTGCAGGTAACTTATTTGGAAGGAGACGAGTTATTCAGATATACGCAAAGGGTGCACGTATACTAGATGGTTCTTACATGACCCAGGAATTGAATTTTGTTGCACATAATTCTGAGCAAACGTCTAGCGAATTGCCGACAGTGGCGTCTGTTTCTATAGCTGATCCTTATGTGTTATTGAAAATGACTGATGGAAGCATTCAATTGCTCCTTGGAGATCCTGCCGCTTGCACTGTTTCTCTTAATGCCCCTGCTATATTTTCAAGCTCAACAGAACCAATATCTGCATGTACACTTTATCATGATAAAGGACCGGAACCGTGGCTTCGAAAGACGAGCACTGATGCATGGCTTTCTACTGGTGTTGCCGAGCCAATTGATGGGAATGATGGATCATATCATGACCACGGTGACATATATTGTTTAGTTTGTTATGAAAATGGCAAACTTGAAATTTTCGATGTGCCTAGCTTTAAAAGTGTTTACTCTGTGGACAACTTTGTTTCTGGAAAGACTTATCTGGCGGATACATATACTAAAGACCCCAACAAATATCCTGATACTAAAGGCTATCTAAATAAGGAACCAGTGCAGAATATGAGAGTGGTCGAGCTGGCTATGCAAAGGTGGTCTGGCCGATACAGTCGTCCTTTTCTTTTTGGAATGCTGAGTGATGGGACAATTCTTTGCTACCATGCTTACTTTTACGAGGGTACAGAAAATGCTGTAAAAGGTGGAGATCCAGTTTCCCCTCGTGGTTCTGCGGACACAAGTAGTATGAGCATTTCAAGGCTGAGAAATTTGAGATTTCTTCGTGTTTCTATTGATATCACTACACGAGAAGAAATGTTGAATGCTGTGAGTAGGCCAAGAATTACTGTATTTAATAATGTGGGAGGCTATCAAGGTTTGTTTCTTAGTGGTTCAAGGCCAGCATGGCTCATGGTCTGCAGAGAACGGATTCGGGTACATCCGCAGCTATGCGATGGTTCCATAGCAGCTTTTGCTGTTCTTCACAATGTAAATTGCAATCATGGTCTTATATATGTTACATCACAGGGTTACCTAAAAATTTGTCAGCTGCCGTCGTCATTTAACTATGACAACCACTGGCCAGTTCAAAAGATTCCTTTGCTGGGCACTCCACATCAAGTCACCTATTATGCCGAAAAGAATCTATATCCACTTATTTTATCTGTTCCTGTTATCCGTCCTTTAAATCAGGTCCTTTCATCTCTGTTGGATCAAGAAATGAGCCAGCAGATAGATAACGACAACTTCAATTCTGATGATCTGCAAAAGACTTATAGTGTTGATGAATTTGAGGTCCGAATATTGGAGCCAGATAAATCTGGTCACTGGGATACTAAGGCTACTGTTCCAATGCAGACCTCTGAAAATGCCCTTACAGTCCGCATTGTTACGTTATTTAATACAACAACAAAAGAGAATGAATCTCTCATGGCCATTGGCACTGCTTATGTGCAAGGAGAGGATGTAGCTGCTCGTGGACGAGTGCTTCTGTTTTCTTTTGCCAAAACTAATGAGAGCTCCCAAAATCTGATTTCAGAAGTCTACTCTAAGGAGCTGAAGGGTGCCGTCTCAAATTTAGCATCTCTTCAGGGTCACTTGCTTATAGCTTCTGGTCCAAAAATCACCTTGCATAAATGGACTGGTTCTGAGTTGAATGGTGTTGCTTTCTATGATGCTCCACTGCATGTTGTGAGCTTGAACATTGTCAAGAATTTCATCTTGTTTGGCGACGTTCATAAAAGCATATATTTCCTTAATTGGAAGGAGCAAGGTGCTCAACTAAGCTTGCTAGCAAAAGATTTTGGACCTTTAAATTGCTATGCAACTGAGTTCTTGATTGATGGTAGCACATTGAGCCTTGTCGTATCGGATGATCAAAAGAACATTCAGATCTTCTATTATGCACCAAAAATGTTGGAGAGCTGGAAAGGGCAGAAGCTTTTGTCAAGGGCAGAGTTTCATGCCGGGGCCCTTGTATCGAAGTTCTTGCGGTTACAGATGCTTCCCACTTCCTCTGATCGATCAGGTGCAACTGTGCCTGGCTCCGAAAAGACCAACCGTTTTGCTCTTCTGTTTAGCACGCTGGACGGTAGCATCGGCTGCATCGCACCGCTTGAGGAGCTCACATTCCGTCGGCTTCAGACTCTGCAAAGGAAACTAGTTGATGCTGTTCCTCATGTTTGCGGCCTGAATCCTAGATCATTCCGGCAGTTCCATTCTAACGGGAAAGCACATCGCCCTGGTCCCGATCATATGGTGGACTTTGAGCTTCTTTCTCATTATGAGATGCTGCCATTGGAGGAACAGCTGGAAATTGCTCACCAAATCGGAACGACCCGGTCGCAGATCCTTTCCAATTTTAATGATCTCTCACTGGGAACGAGTTTTCTGTGA

Protein:   MSYAAFKMMHWPTGIENCAAGFFTHSPSSSSSSSAAAAEATAAAEIPPLPGDELEAAEWQQGRRRRGVGAVPDLVVTAGNVLEIYVVRAQEDEGRAPRASGEQKRGGGGGGVVDGISGARLELVCHYRLHGNVESMAVLSVGADNRSNRRDSIVLAFQDAKITVLEYDDSLHGLRTSSMHCFEGPDWQYLKRGRESFARGPIVKADPSGRCGGALVYGLQMIILKAAQAGQSLVGDDEPNSAGGTISVRIESSYVINLRELDMNHVKDFTFVHGYIEPVMVILHEREPTWAGRISWKHHTCMISALSVSTTLKQHPMIWSASNLPHDAYKLLAVPSPIGGVLVICANSIHYHSQSASCSLSLNSFSSQPDGSLEMPKSNFAVELDAAHATWLSHDVAMFSSKTGELLLLTLVYDGRIVQRLDLVKSKASVLTSGLTTIGSSFFFLGSRLGDSLLVQYSCGTSVPTSSQVKDEATDIDGDVPSAKRLRRMSSDALQDVTSVEELSLYNNAPNSSESAQKSFSFAVRDSLINVGPLKDFSYGLRINADPNSTGLAKQSNYELVCCSGHGKNGALCVLQQSIRPELITEVVLAGCKGIWTVYHKSSRGHATDSSKTMTENDEYHAYLIISLESRTMVLETADDLGEVTETVDYYVHGSTIAAGNLFGRRRVIQIYAKGARILDGSYMTQELNFVAHNSEQTSSELPTVASVSIADPYVLLKMTDGSIQLLLGDPAACTVSLNAPAIFSSSTEPISACTLYHDKGPEPWLRKTSTDAWLSTGVAEPIDGNDGSYHDHGDIYCLVCYENGKLEIFDVPSFKSVYSVDNFVSGKTYLADTYTKDPNKYPDTKGYLNKEPVQNMRVVELAMQRWSGRYSRPFLFGMLSDGTILCYHAYFYEGTENAVKGGDPVSPRGSADTSSMSISRLRNLRFLRVSIDITTREEMLNAVSRPRITVFNNVGGYQGLFLSGSRPAWLMVCRERIRVHPQLCDGSIAAFAVLHNVNCNHGLIYVTSQGYLKICQLPSSFNYDNHWPVQKIPLLGTPHQVTYYAEKNLYPLILSVPVIRPLNQVLSSLLDQEMSQQIDNDNFNSDDLQKTYSVDEFEVRILEPDKSGHWDTKATVPMQTSENALTVRIVTLFNTTTKENESLMAIGTAYVQGEDVAARGRVLLFSFAKTNESSQNLISEVYSKELKGAVSNLASLQGHLLIASGPKITLHKWTGSELNGVAFYDAPLHVVSLNIVKNFILFGDVHKSIYFLNWKEQGAQLSLLAKDFGPLNCYATEFLIDGSTLSLVVSDDQKNIQIFYYAPKMLESWKGQKLLSRAEFHAGALVSKFLRLQMLPTSSDRSGATVPGSEKTNRFALLFSTLDGSIGCIAPLEELTFRRLQTLQRKLVDAVPHVCGLNPRSFRQFHSNGKAHRPGPDHMVDFELLSHYEMLPLEEQLEIAHQIGTTRSQILSNFNDLSLGTSFL